← Back to Skills Marketplace
121
Downloads
0
Stars
0
Active Installs
1
Versions
Install in OpenClaw
/install pseudotime-trajectory-viz
Description
Analyze data with `pseudotime-trajectory-viz` using a reproducible workflow, explicit validation, and structured outputs for review-ready interpretation.
Usage Guidance
This package appears coherent for pseudotime analysis, but because source/homepage are unknown, do the following before trusting it with sensitive data: (1) run the recommended smoke check: python -m py_compile scripts/main.py; (2) inspect scripts/main.py locally (it is included) and run it on a small synthetic or non-sensitive AnnData file to verify behavior and outputs; (3) install dependencies in an isolated virtual environment (venv/conda) to avoid contaminating your system Python; (4) confirm there are no unexpected network calls during execution (e.g., run in an offline or sandboxed environment or monitor network activity); (5) pin dependency versions if you will use it in production and review the provenance/license since repository/homepage is not provided.
Capability Analysis
Type: OpenClaw Skill
Name: pseudotime-trajectory-viz
Version: 1.0.0
The skill bundle provides a legitimate tool for single-cell RNA-seq trajectory analysis and visualization. The core logic in `scripts/main.py` utilizes standard scientific libraries (scanpy, anndata, matplotlib) to perform diffusion pseudotime and PAGA analysis. The instructions in `SKILL.md` are well-structured, emphasizing input validation, reproducible workflows, and security best practices without any evidence of prompt injection or malicious intent. No suspicious behaviors such as data exfiltration, unauthorized file access, or remote code execution were found.
Capability Assessment
Purpose & Capability
Name/description, SKILL.md, README, requirements.txt and scripts/main.py all align: they implement single-cell pseudotime inference and visualization using scanpy/anndata and related libraries. Required packages are appropriate for the stated functionality and there are no unrelated binaries, credentials, or config paths requested.
Instruction Scope
Runtime instructions are narrowly scoped: validate inputs, run a non-destructive smoke check (python -m py_compile scripts/main.py), and execute scripts/main.py with the user-supplied AnnData file. Instructions do not ask the agent to read unrelated system files, environment secrets, or to transmit data to external endpoints.
Install Mechanism
No install spec is provided (instruction-only with included script). Dependencies are listed in requirements.txt for pip; there are no downloads from arbitrary URLs or archive extraction steps in the manifest. This is a low-risk install posture, though installing Python scientific packages can pull many transitive dependencies (expected for this domain).
Credentials
The skill declares no environment variables, no credentials, and no config paths. The code operates on user-specified input files and local outputs only. There are no requested secrets or unrelated environment access.
Persistence & Privilege
always:false (default) and the skill does not request persistent system-wide changes. The skill can be invoked autonomously by an agent (disable-model-invocation:false) which is the platform default; this is not combined with any other broad privileges or secret access here.
How to Use
- Make sure OpenClaw is installed (local or Docker)
- Run the install command in chat:
/install pseudotime-trajectory-viz - After installation, invoke the skill by name or use
/pseudotime-trajectory-viz - Provide required inputs per the skill's parameter spec and get structured output
Version History
v1.0.0
pseudotime-trajectory-viz 1.0.0
- Initial release with structured, reproducible workflow for visualizing single-cell developmental trajectories.
- Supports pseudotime analysis, lineage inference, and overlay of gene expression dynamics on trajectory plots.
- Provides explicit input validation, fallback handling, and output discipline for review-ready results.
- Accepts AnnData (.h5ad) files and outputs trajectory visualizations, pseudotime statistics, and detailed reports.
- Includes audit-ready commands and configurable analysis via command-line parameters.
Metadata
Frequently Asked Questions
What is Pseudotime Trajectory Viz?
Analyze data with `pseudotime-trajectory-viz` using a reproducible workflow, explicit validation, and structured outputs for review-ready interpretation. It is an AI Agent Skill for Claude Code / OpenClaw, with 121 downloads so far.
How do I install Pseudotime Trajectory Viz?
Run "/install pseudotime-trajectory-viz" in the OpenClaw or Claude Code chat to install it in one step — no extra setup required.
Is Pseudotime Trajectory Viz free?
Yes, Pseudotime Trajectory Viz is completely free, licensed under MIT-0. You can download, install and use it at no cost.
Which platforms does Pseudotime Trajectory Viz support?
Pseudotime Trajectory Viz is cross-platform and runs anywhere OpenClaw / Claude Code is available (cross-platform).
Who created Pseudotime Trajectory Viz?
It is built and maintained by AIpoch (@aipoch-ai); the current version is v1.0.0.
More Skills