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Rstudio Runner
作者
Prof. Dr. rer. nat.
· GitHub ↗
· v4.0.1
· MIT-0
239
总下载
0
收藏
0
当前安装
7
版本数
在 OpenClaw 中安装
/install rstudio-runner
功能描述
AI-powered bioinformatics analysis platform with intelligent auto-organization and comprehensive Chinese report generation. Auto-detects sequencing data, gen...
安全使用建议
This skill appears coherent for helping run R/RStudio bioinformatics workflows, but exercise normal caution before executing generated scripts or analyses: 1) Review the generated R scripts (01_*.R etc.) before running to ensure they do only what you expect. 2) Run analyses on non-sensitive test data or inside an isolated environment/container if you have patient data or confidential datasets. 3) Install required R packages from trusted CRAN/Bioconductor sources, and inspect package install steps. 4) Confirm the authorship/contact details if provenance matters. 5) Be aware that the agent may run scripts (it can be invoked autonomously by the model by default); if you want manual control, avoid granting autonomous execution or invoke the skill only interactively.
功能分析
Type: OpenClaw Skill
Name: rstudio-runner
Version: 4.0.1
The 'rstudio-runner' skill (BioinfoAI-Assistant) is a specialized tool for automating bioinformatics workflows, including single-cell and bulk RNA-seq analysis. It provides a structured framework for generating R scripts, organizing output files, and creating Chinese analysis reports. The instructions in SKILL.md and the configuration in skill.json are entirely consistent with its stated purpose, showing no signs of data exfiltration, malicious execution, or harmful prompt injection. The skill appears to be a legitimate academic tool attributed to researchers at the Guangxi Academy of Medical Sciences.
能力评估
Purpose & Capability
Name, description, SKILL.md and skill.json all describe generating R scripts, running analyses in R/RStudio, and organizing outputs. The declared requirements (R, RStudio, Rscript and common bioinformatics R packages) match the stated capabilities (Seurat, DESeq2 workflows, report generation). There are no unrelated credentials, binaries, or surprising requirements.
Instruction Scope
SKILL.md instructs the agent to detect sequencing files, create a structured folder layout, generate R scripts, and run them in RStudio — all within the stated bioinformatics scope. The instructions do not request arbitrary system files, credentials, or external endpoints, and there are no vague 'gather whatever context you need' directives. Triggers target sequencing-related files/directories and relevant keywords.
Install Mechanism
There is no automated install spec or archive download included; this is instruction-only. User-facing install commands are standard (clawhub/openclaw CLI or manual placement). No downloads or extract steps are present that would write or execute arbitrary code on install.
Credentials
The skill does not declare or require environment variables, credentials, or config paths. The packages and binaries it lists (R, RStudio, Rscript, and R packages) are proportional to the stated functionality.
Persistence & Privilege
The skill is not marked always:true and is user-invocable. disable-model-invocation is false (normal default), but the skill does not request persistent system-wide privileges or attempt to modify other skills' configs. There is no indication it writes persistent agents/credentials beyond creating project folders and outputs in the user's workspace.
如何使用
- 确保已安装 OpenClaw（本地或 Docker 部署）
- 在对话框中输入安装命令：
/install rstudio-runner - 安装完成后，直接呼叫该 Skill 的名称或使用
/rstudio-runner触发 - 根据 Skill 的参数说明提供必要输入，即可获得结构化输出
版本历史
v4.0.1
- Added an "安装方法 / Installation" section in SKILL.md, including instructions for installation via ClawHub, OpenClaw CLI, and manual steps.
- Listed system requirements and required R packages in the documentation.
- No code or interface changes; update is documentation-only.
v4.0.0
v4.0.0 is a major update adding Chinese language report generation and associated enhancements.
- Added automatic generation of comprehensive Chinese analysis reports for all workflows.
- Updated descriptions, folder names, and report sections to support both Chinese and English, with a focus on Chinese as default for outputs and documentation.
- Expanded triggers to include the new keyword “生成报告”.
- Revised documentation to clearly explain the new Chinese report features and workflow.
- Maintained all auto-organization and script generation functions from previous versions.
v3.0.0
**BioinfoAI-Assistant v3.0.0 introduces intelligent auto-organization to all outputs and a refined, fully structured analysis workflow.**
- New project folder system: All scripts, plots, tables, reports, R objects, logs, and reproducibility files are auto-organized into standardized subfolders.
- Every file from scripts to figures and results is saved in a pre-defined location; no more manual sorting.
- Expanded supported file/folder triggers for more seamless analysis start.
- Workflow and documentation streamlined to emphasize "analyze once, organize forever."
- All outputs tracked as they are generated, with auto-repair and re-organization if analysis errors occur.
- Updated name, description, and metadata to reflect broad auto-organization and clear author/institution information.
v2.0.0
**Major upgrade: Transformed into an AI-powered bioinformatics analysis platform.**
- Auto-detects sequencing data type, species, and data quality.
- Recommends optimal analysis strategies and pipeline workflows using AI.
- Automatically generates structured project folders and customized R scripts with documentation.
- Opens scripts in RStudio with real-time monitoring and output tracking.
- Includes intelligent error detection and auto-correction for seamless execution.
- Broadened trigger support to include sequencing data files and specialized bioinformatics keywords.
v1.0.2
- Added 赵净洁 as co-author, including contact information in documentation
- Updated author sections and acknowledgments in SKILL.md to reflect co-authorship
- No functional changes to skill triggers or core usage
v1.0.1
- Added author’s name and contact details (including institution and email) in English and Chinese.
- Expanded documentation with installation instructions, detailed usage examples, pane descriptions, and support contact.
- Clarified supported languages (English and Chinese) for commands and auto-activation.
- Improved instructions for common workflows and execution steps in RStudio.
- Refined formatting and organization for readability.
v1.0.0
Initial release of rstudio-runner.
- Launch and open .R or .Rmd files directly in RStudio with one click.
- Supports interactive script execution, step-by-step monitoring, and plotting in the RStudio GUI.
- Auto-activates on upload of R scripts or trigger keywords in English and Chinese.
- Designed for hands-on visual analysis, debugging, and plotting within RStudio, especially for HCC scRNA-seq workflows.
元数据
常见问题
Rstudio Runner 是什么？
AI-powered bioinformatics analysis platform with intelligent auto-organization and comprehensive Chinese report generation. Auto-detects sequencing data, gen... 它是一个面向 Claude Code / OpenClaw 的 AI Agent Skill 插件，目前累计下载 239 次。
如何安装 Rstudio Runner？
在 OpenClaw 或 Claude Code 对话框中运行命令「/install rstudio-runner」即可一键安装，无需额外配置。
Rstudio Runner 是免费的吗？
是的，Rstudio Runner 完全免费，采用 MIT-0 许可证，可自由下载、安装和使用。
Rstudio Runner 支持哪些平台？
Rstudio Runner 跨平台运行，可在任意部署了 OpenClaw / Claude Code 的环境中使用（cross-platform）。
谁开发了 Rstudio Runner？
由 Prof. Dr. rer. nat.（@lingzhangmeng）开发并维护，当前版本 v4.0.1。
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