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ScholarGraph-CancerFusionGenesResearch
by
Josephyb97
· GitHub ↗
· v1.3.0
297
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2
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Install in OpenClaw
/install scholargraph-cancer-fusiongenes-research-flow
Description
使用 ScholarGraph v1.4 及以上版本 进行癌症融合基因文献调研的全流程技能。包括搜索、多轮合并去重、提取信息、生成报告和 Excel 表格。
Usage Guidance
This skill appears coherent for running ScholarGraph-based literature searches and producing Excel reports. Before installing or running it:
- Only provide the MINIMAX_API_KEY (and other provider keys) if you trust the LLM provider and the environment where the key will be stored.
- The instructions use absolute paths (/root/.openclaw/..., /workspace/...). Confirm these paths are appropriate for your environment or change them to safer, user-specific directories to avoid writing into root-owned locations.
- SKILL.md mentions an optional SERPER_API_KEY for a different download method — you only need to supply that if you plan to use that path.
- Review the included JS files (generate_excel_template.js, merge_results.js) if you run code from untrusted sources; they are simple and local but will be executed by node.
- Confirm you have bun/node installed and that the ScholarGraph CLI (cli.ts) is present and trusted before running the provided commands.
Capability Analysis
Type: OpenClaw Skill
Name: scholargraph-cancer-fusiongenes-research-flow
Version: 1.3.0
The skill bundle is a legitimate research tool designed for systematic literature review of cancer fusion genes using the ScholarGraph framework. It provides a structured workflow for searching medical databases, downloading PDFs from Europe PMC, deduplicating results via merge_results.js, and generating detailed Excel reports using generate_excel_template.js. No indicators of malicious intent, data exfiltration, or harmful prompt injection were found; the scripts and instructions are entirely consistent with the stated medical research purpose.
Capability Assessment
Purpose & Capability
Name/description (ScholarGraph-based literature research) match the requested binaries (bun, node) and the environment variables (AI_PROVIDER, MINIMAX_API_KEY) needed to run a ScholarGraph CLI that uses an LLM provider. Bundled JS files are utilities (merge + Excel generation) directly relevant to the described workflow.
Instruction Scope
Runtime instructions are focused on searching, downloading open PDFs, merging JSON results, and generating Excel reports. Minor concerns: several absolute paths are used (e.g., /root/.openclaw/... and /workspace/...), which assume particular filesystem layout and elevated user directory structure; SKILL.md mentions SERPER_API_KEY for an alternate download path but that variable is not declared in the skill metadata (it's optional in the text). No instructions attempt to read unrelated secrets or system files.
Install Mechanism
This is an instruction-only skill with two small JS utilities included. There is no download-from-URL or automated installer specified. No high-risk install behavior detected.
Credentials
Requested env vars (AI_PROVIDER and MINIMAX_API_KEY) are proportionate for a tool that calls an LLM provider. Note: SKILL.md references an additional SERPER_API_KEY for optional download functionality but that variable is not listed as required in the metadata — it's optional in instructions but users should be aware of it before providing additional keys. No unrelated cloud credentials or broad secrets are requested.
Persistence & Privilege
always:false and default autonomous invocation are present (normal). The skill does not request permanent system-wide privileges or modify other skills. It writes/reads expected local files (roundN.json, merged_results.json, Excel output).
How to Use
- Make sure OpenClaw is installed (local or Docker)
- Run the install command in chat:
/install scholargraph-cancer-fusiongenes-research-flow - After installation, invoke the skill by name or use
/scholargraph-cancer-fusiongenes-research-flow - Provide required inputs per the skill's parameter spec and get structured output
Version History
v1.3.0
- 更新描述,明确支持 ScholarGraph v1.4 及以上版本,确保流程适配新版。
- 文档内容和用法保持一致,仅对描述做细微调整,无功能或流程更改。
- 无需担心兼容性,新老用户均可无缝使用。
v1.1.0
Version 1.1.0 – 支持多轮合并和 Excel 生成自动化
- 新增 merge_results.js,支持多轮搜索结果智能合并与去重
- 新增 generate_excel_template.js,实现融合基因信息自动生成标准 Excel 表格,附规范化频率级别与独立参考文献字段
- 文档增加多轮检索、合并去重和 Excel 格式细则说明
- 明确输出表格包含字段要求及自动标签逻辑
- 工作流更优化,便于批量和高质量数据汇总
v1.0.0
ScholarGraph skill refocused for cancer fusion gene literature reviews, with major simplification.
- Specializes the skill for comprehensive cancer fusion gene literature analysis, leveraging ScholarGraph v1.4.
- Replaces previous generic academic toolkit features and documentation with a step-by-step workflow for biomedical research use.
- Provides detailed instructions on literature search, PDF download, targeted gene information extraction, reporting, and Excel table generation.
- Dependency and environment requirements narrowed, with emphasis on MiniMax AI provider.
- Removes all multi-module code and documentation, retaining only workflow instructions in FLOW.md.
Metadata
Frequently Asked Questions
What is ScholarGraph-CancerFusionGenesResearch?
使用 ScholarGraph v1.4 及以上版本 进行癌症融合基因文献调研的全流程技能。包括搜索、多轮合并去重、提取信息、生成报告和 Excel 表格。 It is an AI Agent Skill for Claude Code / OpenClaw, with 297 downloads so far.
How do I install ScholarGraph-CancerFusionGenesResearch?
Run "/install scholargraph-cancer-fusiongenes-research-flow" in the OpenClaw or Claude Code chat to install it in one step — no extra setup required.
Is ScholarGraph-CancerFusionGenesResearch free?
Yes, ScholarGraph-CancerFusionGenesResearch is completely free (open-source). You can download, install and use it at no cost.
Which platforms does ScholarGraph-CancerFusionGenesResearch support?
ScholarGraph-CancerFusionGenesResearch is cross-platform and runs anywhere OpenClaw / Claude Code is available (cross-platform).
Who created ScholarGraph-CancerFusionGenesResearch?
It is built and maintained by Josephyb97 (@josephyb97); the current version is v1.3.0.
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