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Install in OpenClaw
/install microbiome-diversity-reporter
Description
Interpret Alpha and Beta diversity metrics from 16S rRNA sequencing results.
Usage Guidance
Overall this package looks coherent for running local microbiome diversity analyses. Before installing or running: (1) review the full scripts/main.py yourself (or run python -m py_compile scripts/main.py) to confirm no hidden network calls or file access, (2) install dependencies in an isolated virtual environment, (3) run initial tests on synthetic or non-sensitive data, and (4) prefer executing in a sandboxed environment if the skill origin is unknown (no homepage/author verification). If you need higher assurance, ask the publisher for a link to source or a provenance record before using with sensitive data.
Capability Assessment
Purpose & Capability
Name/description (interpret alpha/beta diversity from 16S data) match the included SKILL.md and the Python script's visible functionality (alpha and beta calculators, rarefaction, PCoA). Requested libraries (numpy, pandas, scipy, scikit-bio, plotting libs) are appropriate for this domain. The lack of required env vars, binaries, or config paths is proportionate.
Instruction Scope
Runtime instructions restrict the agent to validating inputs and running the packaged script on local OTU/metadata TSV files, producing local reports in HTML/JSON/Markdown. SKILL.md does not instruct reading unrelated system files, exporting secrets, or contacting external endpoints.
Install Mechanism
No install spec is provided (instruction-only skill with an included script). Dependencies are declared in requirements.txt and are common scientific packages. There are no network download URLs or extraction steps in the metadata that would write arbitrary code to disk beyond the packaged files.
Credentials
No environment variables, credentials, or config paths are required. The script uses only local file inputs (OTU/metadata) and standard libraries; requested env/credential access would have been disproportionate but none are present.
Persistence & Privilege
The skill does not request permanent presence (always:false) and does not declare modifications to other skills or system-wide settings. It appears to be a self-contained, on-demand analysis tool.
How to Use
- Make sure OpenClaw is installed (local or Docker)
- Run the install command in chat:
/install microbiome-diversity-reporter - After installation, invoke the skill by name or use
/microbiome-diversity-reporter - Provide required inputs per the skill's parameter spec and get structured output
Version History
v1.0.0
Initial release of microbiome-diversity-reporter.
- Provides a workflow to interpret Alpha and Beta diversity metrics from 16S rRNA sequencing results.
- Supports command-line execution with configurable input/output parameters and multiple output formats (HTML, JSON, Markdown).
- Generates detailed reports: alpha/beta diversity analyses, visualizations (PCoA, rarefaction curves, heatmaps), and statistical summaries.
- Implements input validation, explicit assumptions, bounded scope, and fallback handling for missing/invalid data.
- Includes reference material, a security checklist, risk assessment, and audit-ready example commands.
- Designed for reproducibility, clear assumptions, and academic writing compatibility.
Metadata
Frequently Asked Questions
What is Microbiome Diversity Reporter?
Interpret Alpha and Beta diversity metrics from 16S rRNA sequencing results. It is an AI Agent Skill for Claude Code / OpenClaw, with 134 downloads so far.
How do I install Microbiome Diversity Reporter?
Run "/install microbiome-diversity-reporter" in the OpenClaw or Claude Code chat to install it in one step — no extra setup required.
Is Microbiome Diversity Reporter free?
Yes, Microbiome Diversity Reporter is completely free, licensed under MIT-0. You can download, install and use it at no cost.
Which platforms does Microbiome Diversity Reporter support?
Microbiome Diversity Reporter is cross-platform and runs anywhere OpenClaw / Claude Code is available (cross-platform).
Who created Microbiome Diversity Reporter?
It is built and maintained by AIpoch (@aipoch-ai); the current version is v1.0.0.
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