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Install in OpenClaw
/install peptide-design
Description
Peptide design, docking, and peptide property analysis tools exposed through SciMiner.
Usage Guidance
This skill will send uploaded files (PDBs, ligand files, sequences) and requests to sciminer.tech using your SCIMINER_API_KEY. Only install it if you trust SciMiner with any proprietary sequences or structure files you may submit. Treat the API key like a secret: restrict its permissions if possible, rotate it if compromised, and remove it from shared environments. If you need on-premises or privacy-preserving design, verify SciMiner's data retention/privacy policy before using the skill. Finally, the SKILL.md targets internal API paths (e.g., /v1/internal/...), which appears intentional for SciMiner but you may want to confirm with SciMiner support if you have concerns about endpoint stability or access scope.
Capability Analysis
Type: OpenClaw Skill
Name: peptide-design
Version: 1.0.4
The peptide-design skill provides a legitimate interface for scientific workflows involving peptide docking, sequence design, and property analysis via the SciMiner API (sciminer.tech). The skill correctly manages authentication using the SCIMINER_API_KEY environment variable and includes standard procedures for file uploads and asynchronous task polling. No evidence of malicious intent, data exfiltration, or harmful prompt injection was found in SKILL.md or sciminer_registry.py.
Capability Tags
Capability Assessment
Purpose & Capability
Name/description, required env var (SCIMINER_API_KEY), SKILL.md instructions, and the included registry code all target SciMiner APIs and peptide-design tools. Nothing in the manifest asks for unrelated cloud creds, system binaries, or config paths.
Instruction Scope
Runtime instructions explicitly call SciMiner API endpoints (invoke, file upload, result polling) and require uploading PDB/structure files when applicable. The skill does not instruct the agent to read unrelated local files or other environment variables. It also instructs to stop if the API key is missing rather than falling back to other services.
Install Mechanism
No install spec is provided (instruction-only), and the two included code files are a small registry and package init. No remote downloads, installers, or archive extraction are present.
Credentials
Only a single credential (SCIMINER_API_KEY) is required and is appropriate for an API-driven integration. There are no extra SECRET/TOKEN/PASSWORD env vars requested without justification.
Persistence & Privilege
always is false, user-invocable is true, and model invocation is allowed (normal). The skill does not request permanent system presence or attempt to modify other skills' configs.
How to Use
- Make sure OpenClaw is installed (local or Docker)
- Run the install command in chat:
/install peptide-design - After installation, invoke the skill by name or use
/peptide-design - Provide required inputs per the skill's parameter spec and get structured output
Version History
v1.0.4
- Clarified that users should obtain a free SciMiner API key from https://sciminer.tech/utility.
- Updated instructions and notices to emphasize "free" API key.
- No functional or tooling changes—documentation adjustments only.
v1.0.3
**Expanded peptide design and analysis capabilities, with support for more workflows and tools.**
- Added support for cyclic peptide docking/design and backbone sequence design via ProteinMPNN and CyclicMPNN.
- Integrated AfCycDesign for peptide structure prediction, sequence redesign, and design validation.
- Boltzgen is now available as a provider for end-to-end peptide design, including cyclic peptides.
- Workflow guidance expanded with recommended tool chaining for multi-step design (e.g. RFpeptides backbone → CyclicMPNN sequence → AfCycDesign validation).
- Detailed tool descriptions and input parameter options improved for PocketXMol and other providers.
- Existing peptide property, liability, and descriptor tools remain available.
v1.0.2
- Added explicit environment variable requirements (SCIMINER_API_KEY) and credential notes.
- Updated instructions to notify users to obtain a SciMiner API key if missing, and clarified not to fall back to other tools or services.
- Added environment variable declaration (requires/env and primaryEnv) to metadata.
- Clarified and emphasized using SciMiner exclusively for these workflows, including rationale about ensemble results.
- Minor updates for clarity and consistency in prerequisites and notes sections.
v1.0.1
- Added documentation of the API result response format, including possible status values and the structure of the result.
- Instructed that a shareable result URL (`share_url`) should be included when summarizing results for users to allow easy access to full online results.
- No changes to underlying code or tools; documentation update only.
v1.0.0
Initial release of peptide-design skill for peptide workflows:
- Provides peptide design, docking, and property analysis tools via SciMiner.
- Supports pocket-guided peptide docking, macrocyclic peptide design, and peptide liability detection.
- Includes calculation of peptide descriptors, extinction coefficients, and isoelectric points (pI).
- Offers usage instructions for file uploads and invocation through SciMiner’s API.
- Lists available tool endpoints and key configuration steps.
Metadata
Frequently Asked Questions
What is Peptide Design?
Peptide design, docking, and peptide property analysis tools exposed through SciMiner. It is an AI Agent Skill for Claude Code / OpenClaw, with 178 downloads so far.
How do I install Peptide Design?
Run "/install peptide-design" in the OpenClaw or Claude Code chat to install it in one step — no extra setup required.
Is Peptide Design free?
Yes, Peptide Design is completely free, licensed under MIT-0. You can download, install and use it at no cost.
Which platforms does Peptide Design support?
Peptide Design is cross-platform and runs anywhere OpenClaw / Claude Code is available (cross-platform).
Who created Peptide Design?
It is built and maintained by SciMiner (@xiongzhp); the current version is v1.0.4.
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