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Vaccine Design Orchestrator
by
barrett-cryptoDNA
· GitHub ↗
· v1.0.0
· MIT-0
237
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1
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Install in OpenClaw
/install vaccine-design-orchestrator
Description
Use this skill when the user wants to evaluate a new nanoparticle vaccine candidate, redesign a computational screening workflow, define gate criteria, or pr...
Usage Guidance
Before installing or enabling this skill, consider the following:
- Clarify execution model: ask the skill author whether the agent will (A) only produce SOPs/job scripts and recommendations, or (B) actually execute AlphaFold/ESMFold/GROMACS/CpHMD/FEP jobs. If (B), do not enable until required binaries, cluster/cloud credentials, and access policies are explicitly declared.
- Verify tool availability and credentials: running the described pipeline typically requires installed ML/structure tools, GROMACS, GPU/HPC access, and possibly licensed software. Ensure you control any credentials and that the skill metadata lists them.
- Data and safety: the skill deals with computational vaccine design (potentially dual-use). Confirm how simulation data and sequence designs are stored, who can access them, and whether the skill will transmit outputs externally.
- Limit agent autonomy until clarified: because instructions are open-ended about execution, restrict autonomous invocation if you cannot verify compute targets and logging/audit controls.
- Ask the author for improved metadata: require explicit 'required binaries' and 'required env vars' (e.g., paths to tools, cluster scheduler credentials), and a clear statement whether the skill executes commands or only prepares scripts.
If the author can provide those clarifications and align metadata with the SKILL.md's real execution model, the coherence concerns should be resolved.
Capability Analysis
Type: OpenClaw Skill
Name: vaccine-design-orchestrator
Version: 1.0.0
The skill bundle is a specialized scientific orchestrator for nanoparticle vaccine design and computational screening. The SKILL.md file defines a structured workflow for evaluating vaccine candidates using bioinformatics tools like AlphaFold and GROMACS, including multi-level decision gates (Go/Hold/Kill). There is no evidence of malicious code, data exfiltration, or prompt injection; the instructions are strictly aligned with the stated purpose of scientific research management.
Capability Assessment
Purpose & Capability
SKILL.md describes a complex computational vaccine-design pipeline (sequence design, AlphaFold/ESMFold, Boltz-1/AF3, GROMACS MD, CpHMD, TI/FEP, etc.). The skill metadata declares no required binaries, no install, and no environment/credentials. For a skill that expects to run or orchestrate heavy ML/MD tools, omitting required tools, runtimes, or compute access is an inconsistency: either the agent is expected to actually run these tools (in which case required binaries / compute credentials should be declared) or the skill only produces plans/SOPs (which should be stated explicitly).
Instruction Scope
The SKILL.md stays on-topic (design, prediction, MD, gating, outputs). It does not instruct reading unrelated system files or exfiltrating data. However instructions are broad and sometimes assume the agent will execute intensive simulations (e.g., 'GROMACS 100 ns') without clarifying whether the agent should run them itself, dispatch jobs to a user/HPC, or only produce job scripts and SOPs. That ambiguity grants wide discretion to the agent and should be clarified.
Install Mechanism
Instruction-only skill with no install spec and no code files. Lowest technical install risk. There are no downloaded artifacts or install scripts to analyze.
Credentials
The workflow implies need for GPUs, MD engines, possibly HPC credentials, license keys, or cloud accounts for heavy compute, but the skill declares no required environment variables, credentials, or config paths. This mismatch is disproportionate: either declare the compute/auth requirements or limit the skill to generating non-executing artifacts (SOPs, scripts).
Persistence & Privilege
Skill is user-invocable, not always: true, and does not request to modify other skills or system settings. Autonomous invocation is allowed by default but not combined with other privilege escalation indicators.
How to Use
- Make sure OpenClaw is installed (local or Docker)
- Run the install command in chat:
/install vaccine-design-orchestrator - After installation, invoke the skill by name or use
/vaccine-design-orchestrator - Provide required inputs per the skill's parameter spec and get structured output
Version History
v1.0.0
Initial release with comprehensive vaccine design orchestration workflow.
- Provides end-to-end management for nanoparticle vaccine candidate evaluation, screening workflow redesign, gate criteria definition, and Go/Hold/Kill decision making.
- Outlines a multi-level, gate-based workflow including sequence design, structure prediction, MD audits, and advanced validation steps.
- Enforces clear criteria, reproducibility, and required decision checkpoints for each workflow stage.
- Specifies required output format for consistent reporting and decision making.
- Includes detailed rules, triggers for advanced computational steps, and a missing information checklist for user guidance.
Metadata
Frequently Asked Questions
What is Vaccine Design Orchestrator?
Use this skill when the user wants to evaluate a new nanoparticle vaccine candidate, redesign a computational screening workflow, define gate criteria, or pr... It is an AI Agent Skill for Claude Code / OpenClaw, with 237 downloads so far.
How do I install Vaccine Design Orchestrator?
Run "/install vaccine-design-orchestrator" in the OpenClaw or Claude Code chat to install it in one step — no extra setup required.
Is Vaccine Design Orchestrator free?
Yes, Vaccine Design Orchestrator is completely free, licensed under MIT-0. You can download, install and use it at no cost.
Which platforms does Vaccine Design Orchestrator support?
Vaccine Design Orchestrator is cross-platform and runs anywhere OpenClaw / Claude Code is available (cross-platform).
Who created Vaccine Design Orchestrator?
It is built and maintained by barrett-cryptoDNA (@barrett-cryptodna); the current version is v1.0.0.
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