Single-cell Pipeline

Generate single-cell RNA-seq analysis code templates for Seurat and Scanpy, supporting QC, clustering, visualization, and downstream analysis. Trigger when u...

This skill appears coherent for generating single-cell analysis templates, but before using it: (1) review scripts/main.py to confirm output paths and ensure it will not overwrite important local files; (2) run it in an isolated virtualenv/conda environment because dependencies (scanpy, scvi, etc.) are large and may require specific Python/R versions or GPUs for some methods; (3) note that the generated pipelines will read local genomic data files—treat those files as sensitive and run on systems with appropriate data governance; (4) pin dependency versions or inspect the referenced requirements.txt before installing packages; and (5) if you plan to run any generated code (e.g., training scVI), verify computational/resource requirements and that optional third-party tools are trusted. Overall, no credential exposure or network exfiltration is evident.

Type: OpenClaw Skill Name: single-cell-rnaseq-pipeline Version: 1.0.0 The skill bundle is a legitimate tool designed to generate bioinformatics code templates for single-cell RNA-seq analysis using Seurat (R) and Scanpy (Python). The core logic in `scripts/main.py` uses string interpolation to create analysis scripts based on user-defined parameters (e.g., species, batch correction method) and writes them to a specified output path. No evidence of data exfiltration, unauthorized network access, or malicious prompt injection was found; the file system operations are consistent with the tool's stated purpose of generating local code frameworks.