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Install in OpenClaw
/install ppi-string-query
Description
Query STRING database for protein-protein interactions with confidence scores. Use this skill when: (1) Finding interaction partners for a protein of interes...
Usage Guidance
This skill appears coherent and low-risk: it simply queries the public STRING API for protein interaction data and formats results. Before installing, ensure your agent runtime provides a trusted implementation of TOOLS['ppi_string_request'] (the example assumes such a tool) and be aware that queries will result in network calls to string-db.org (so avoid sending any sensitive or private identifiers). Also observe STRING API rate limits when running batch queries.
Capability Analysis
Type: OpenClaw Skill
Name: ppi-string-query
Version: 1.0.0
The skill bundle provides a legitimate interface for querying the STRING protein-protein interaction database. The code in examples/basic_query.py and the instructions in SKILL.md are well-documented, align perfectly with the stated purpose of bioinformatics research, and contain no evidence of data exfiltration, malicious execution, or prompt injection.
Capability Assessment
Purpose & Capability
Name/description align with the files and example: the skill is for querying STRING for protein–protein interactions and confidence scores. No unrelated binaries, env vars, or config paths are requested.
Instruction Scope
SKILL.md and the example only show calling a runtime tool (TOOLS['ppi_string_request']) with UniProt IDs and parameters, parsing returned scores, and formatting output. The instructions do not ask the agent to read arbitrary files, environment variables, or send data to endpoints outside the STRING API. Note: the example adjusts sys.path to import the local tool registry (typical for packaged examples) and assumes a platform-provided ppi_string_request tool that will perform network calls to STRING.
Install Mechanism
No install spec is provided (instruction-only with an example script). No downloads or archive extraction are present.
Credentials
The skill declares no required environment variables or credentials. That is proportionate for public STRING queries which do not require user secrets in typical usage.
Persistence & Privilege
always is false and the skill does not request elevated or persistent system privileges. Normal autonomous invocation is allowed by platform defaults.
How to Use
- Make sure OpenClaw is installed (local or Docker)
- Run the install command in chat:
/install ppi-string-query - After installation, invoke the skill by name or use
/ppi-string-query - Provide required inputs per the skill's parameter spec and get structured output
Version History
v1.0.0
- Initial release of ppi-string-query skill for accessing STRING database protein-protein interactions.
- Supports querying by UniProt ID, retrieving interaction partners, and confidence scores.
- Allows filtering by organism, confidence thresholds, and number of interactors.
- Returns detailed interaction scores (combined, experimental, text mining, etc.).
- Includes code examples, parameter descriptions, error handling, and organism ID references.
Metadata
Frequently Asked Questions
What is STRING PPI Query?
Query STRING database for protein-protein interactions with confidence scores. Use this skill when: (1) Finding interaction partners for a protein of interes... It is an AI Agent Skill for Claude Code / OpenClaw, with 111 downloads so far.
How do I install STRING PPI Query?
Run "/install ppi-string-query" in the OpenClaw or Claude Code chat to install it in one step — no extra setup required.
Is STRING PPI Query free?
Yes, STRING PPI Query is completely free, licensed under MIT-0. You can download, install and use it at no cost.
Which platforms does STRING PPI Query support?
STRING PPI Query is cross-platform and runs anywhere OpenClaw / Claude Code is available (cross-platform).
Who created STRING PPI Query?
It is built and maintained by HollyYa (@hollyya); the current version is v1.0.0.
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