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Bioinformatics Engineer Skill
by
Fang, Chao
· GitHub ↗
· v1.0.0
· MIT-0
15
Downloads
0
Stars
1
Active Installs
1
Versions
Install in OpenClaw
/install bioinfo-engineer-skill
Description
Provides best-practice bioinformatics engineering: conda env mgmt, secrets isolation, Git+DVC data versioning, relative paths, and reusable pipelines.
How to Use
- Make sure OpenClaw is installed (local or Docker)
- Run the install command in chat:
/install bioinfo-engineer-skill - After installation, invoke the skill by name or use
/bioinfo-engineer-skill - Provide required inputs per the skill's parameter spec and get structured output
Version History
v1.0.0
v1.0.0 - Initial release
Core principles:
- Tool reuse (Bioconda first), no reinventing wheels
- Relative paths (project-root-relative, no auto-conversion)
- Git + DVC for code + big data versioning
- .env isolation for secrets, never commit
- Experience pipeline repository (Snakemake/WDL/DVC Pipeline)
- Git Flow + Conventional Commits
- Document-driven with auto-generated Rmarkdown reports + shell scripts
15 sections covering environment management, secrets, DVC, relative paths,
experience pipelines, tool reuse, Git Flow, documentation automation,
QC validation, data management, interaction protocol, error handling,
quick-start template, and reference resources.
Metadata
Frequently Asked Questions
What is Bioinformatics Engineer Skill?
Provides best-practice bioinformatics engineering: conda env mgmt, secrets isolation, Git+DVC data versioning, relative paths, and reusable pipelines. It is an AI Agent Skill for Claude Code / OpenClaw, with 15 downloads so far.
How do I install Bioinformatics Engineer Skill?
Run "/install bioinfo-engineer-skill" in the OpenClaw or Claude Code chat to install it in one step — no extra setup required.
Is Bioinformatics Engineer Skill free?
Yes, Bioinformatics Engineer Skill is completely free, licensed under MIT-0. You can download, install and use it at no cost.
Which platforms does Bioinformatics Engineer Skill support?
Bioinformatics Engineer Skill is cross-platform and runs anywhere OpenClaw / Claude Code is available (cross-platform).
Who created Bioinformatics Engineer Skill?
It is built and maintained by Fang, Chao (@biociao); the current version is v1.0.0.
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